Next Generation Sequencing and Whole Genome Selection in Aquaculture
Next Generation Sequencing and Whole Genome Selection in Aquaculture
Author(s): Zhanjiang (John) LiuRecent developments in DNA marker technologies, in particular the emergence of Single Nucleotide Polymorphism (SNP) discovery, have rendered some of the traditional methods of genetic research outdated. Next Generation Sequencing and Whole Genome Selection in Aquaculture comprehensively covers the current state of research in whole genome selection and applies these discoveries to the aquaculture industry specifically. The text begins with a thorough review of SNP and transitions into topics such as next generation sequencing, EST data mining, SNP quality assessment, and whole genome selection principles. Ending with a discussion of the technology's specific applications to the industry, this text will be a valuable reference for those involved in all aspects of aquaculture research.
Special Features:
- Unique linking of SNP technologies, next generation sequencing technologies, and whole genome selection in the context of aquaculture research
- Thorough review of Single Nucleotide Polymorphism and existing research
- 8-page color plate section featuring detailed illustrations
Availability: In Print
Publication date: February 2011
Binding: Hardback
Dimensions: Unknown
Weight: Unknown
Extent: 232pp
ISBN: 978-0-8138-0637-2
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Next Generation Sequencing and Whole Genome Selection in Aquaculture
Preface.List of Contributors.
- Genomic Variations, Marker Technologies and Their Usefulness for Genome-Based Selection (Zhanjiang Liu).
- Copy Number Variations (Jianguo Lu and Zhanjiang Liu).
- Next generation DNA Sequencing Technologies and Their Applications (Qingshu Meng and Jun Yu).
- Library Construction for Next Generation Sequencing (Huseyin Kucuktas and Zhanjiang Liu).
- SNP Discovery through de novo Deep Sequencing Using the Next Generation Sequencing (Geoff C. Waldbieser).
- SNP Discovery through EST Data Mining (Shaolin Wang and Zhanjiang Liu).
- SNP Quality Assessment (Shaolin Wang, Hong Liu, and Zhanjiang Liu).
- SNP Genotyping Platforms (Eric Peatman).
- SNP analysis with duplicated fish genomes: Differentiation of SNPs, paralogous sequence variants and multi-site variants (Cecilia Castano, Yniv Palti, and Caird Rexroad).
- Genomic Selection for Aquaculture: Principles and Procedures (Anna K. Sonesson).
- Genomic Selection in Aquaculture: Methods and Practical Considerations (Ashok Ragavendran and William M. Muir).
- Comparison of Index Selection, BLUP, MAS, and Whole Genome Selection (Zhenmin Bao).
- Copy Number Variations (Jianguo Lu and Zhanjiang Liu).
Color plates appear between pages 108 and 109.
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